Citation
Petkau A, Mabon P, Sieffert C, Knox N, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz L, Nadon C, Reimer A, Taboada E, Beiko R, Hsiao W, Brinkman F, Graham M, Van Domselaar G. SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology. 08/06/2017. M Gen 3(6): doi:10.1099/mgen.0.000116.
Additional comparisons with other pipelines
Katz Lee S., Griswold Taylor, Williams-Newkirk Amanda J., Wagner Darlene, Petkau Aaron, Sieffert Cameron, Van Domselaar Gary, Deng Xiangyu, Carleton Heather A. A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens. Front Microbiol 2017;8:375. doi: 10.3389/fmicb.2017.00375.
Contact
Comments, questions, or issues can be sent to Aaron Petkau - aaron.petkau@phac-aspc.gc.ca.